https://i.hizliresim.com/9mDELr.jpg   #### <h1>Expected behavior</h1>   <h3>Optimizing DNA Chain Geometry</h3>   #### <h1>Actual behavior</h1>   <h3>The program does not respond and then Avogadro.exe stops working</h3>   #### <h1>How to reproduce</h1>   I was building Dna chain. After created chain, i wanted to optimize geometry. I clicked Optimize Geometry in Extensions section. Then, the program didn’t respond and Avogadro.exe stopped working. I repeated this process and it gave the same error. This time, i decided to try a small chain. I wrote DNA chain that only contains A, C, T, G bases. Then, i clicked Optimize Geometry and the optimization has finished succesfully. When the Dna chain contains about 45 bases, Avogadro stops working. But there is no problem in optimization of small Dna chains. When i tried optimizating in a long Dna chain again and again, Avogadro gave the same error. So, the program is shutting down itself. This bug causes the program to stop working and shutdown itself. It should be fixed.   * Browser: Google Chrome 63.0.3239.132 (Official) * Operating system: Windows 7 professional SP1 (32 bit) İntel Core 2 Duo 2.13 Ghz , 4 gb RAM * Program Version: Avogadro 1.2.0 (32-bit)   #### <h1>Recording Of The Bug</h1>   * Extensions – Optimize Geometry – Avogadro.exe stopped working Gif’s:   <center>https://media.giphy.com/media/SIpXZT2mBcyB0f4m0A/giphy.gif </center>   * Small Chain – Optimize Geometry and Long Chain – Optimize Geometry Video’s:   <iframe width="1263" height="480" src="https://www.youtube.com/embed/sM99WhbumVY" frameborder="0" allow="autoplay; encrypted-media" allowfullscreen></iframe>   * You can see the error in the video in detail below:   <iframe width="1263" height="480" src="https://www.youtube.com/embed/9910-60je14" frameborder="0" allow="autoplay; encrypted-media" allowfullscreen></iframe>     <br /><hr/><em>Posted on <a href="https://utopian.io/utopian-io/@emirfirlar/bug-avogadro-molecule-editor-if-you-doing-optimize-geometry-in-a-long-dna-chain-the-program-does-not-respond-and-stops-working">Utopian.io - Rewarding Open Source Contributors</a></em><hr/>
| author | emirfirlar | ||||||
|---|---|---|---|---|---|---|---|
| permlink | bug-avogadro-molecule-editor-if-you-doing-optimize-geometry-in-a-long-dna-chain-the-program-does-not-respond-and-stops-working | ||||||
| category | utopian-io | ||||||
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| created | 2018-02-15 21:59:12 | ||||||
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| voter | weight | wgt% | rshares | pct | time |
|---|---|---|---|---|---|
| minnowsupport | 0 | 19,366,303,852 | 0.5% | ||
| cifer | 0 | 3,166,131,764 | 80% | ||
| utopian-io | 0 | 4,413,555,055,407 | 3% | ||
| wehmoen | 0 | 3,185,428,209 | 100% | ||
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<p>Congratulations! This post has been upvoted from the communal account, @minnowsupport, by emirfirlar from the Minnow Support Project. It's a witness project run by aggroed, ausbitbank, teamsteem, theprophet0, someguy123, neoxian, followbtcnews, and netuoso. The goal is to help Steemit grow by supporting Minnows. Please find us at the <a href="https://discord.gg/HYj4yvw"> Peace, Abundance, and Liberty Network (PALnet) Discord Channel</a>. It's a completely public and open space to all members of the Steemit community who voluntarily choose to be there.</p> <p>If you would like to delegate to the Minnow Support Project you can do so by clicking on the following links: <a href="https://v2.steemconnect.com/sign/delegateVestingShares?delegator=&delegatee=minnowsupport&vesting_shares=102530.639667%20VESTS">50SP</a>, <a href="https://v2.steemconnect.com/sign/delegateVestingShares?delegator=&delegatee=minnowsupport&vesting_shares=205303.639667%20VESTS">100SP</a>, <a href="https://v2.steemconnect.com/sign/delegateVestingShares?delegator=&delegatee=minnowsupport&vesting_shares=514303.639667%20VESTS">250SP</a>, <a href="https://v2.steemconnect.com/sign/delegateVestingShares?delegator=&delegatee=minnowsupport&vesting_shares=1025303.639667%20VESTS">500SP</a>, <a href="https://v2.steemconnect.com/sign/delegateVestingShares?delegator=&delegatee=minnowsupport&vesting_shares=2053030.639667%20VESTS">1000SP</a>, <a href="https://v2.steemconnect.com/sign/delegateVestingShares?delegator=&delegatee=minnowsupport&vesting_shares=10253030.639667%20VESTS">5000SP</a>. <br><strong>Be sure to leave at least 50SP undelegated on your account.</strong></p>
| author | minnowsupport |
|---|---|
| permlink | re-bug-avogadro-molecule-editor-if-you-doing-optimize-geometry-in-a-long-dna-chain-the-program-does-not-respond-and-stops-working-20180221t233935 |
| category | utopian-io |
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| created | 2018-02-21 23:39:36 |
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| root_title | "Bug: Avogadro Molecule Editor - If you are doing "Optimize Geometry" in a long Dna Chain, the program does not respond and stops working !" |
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Thank you for the contribution. It has been approved. Your bug report is valid but please remove the Utopian banner at the bottom. Bug reports need to be formal and should not contain irrelevant content. Your other contributions will be reviewed once you removed it there as well. You can contact us on [Discord](https://discord.gg/uTyJkNm). **[[utopian-moderator]](https://utopian.io/moderators)**
| author | mkt |
|---|---|
| permlink | re-emirfirlar-bug-avogadro-molecule-editor-if-you-doing-optimize-geometry-in-a-long-dna-chain-the-program-does-not-respond-and-stops-working-20180220t024158832z |
| category | utopian-io |
| json_metadata | {"tags":["utopian-io"],"community":"utopian","app":"utopian/1.0.0"} |
| created | 2018-02-20 02:42:00 |
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| root_title | "Bug: Avogadro Molecule Editor - If you are doing "Optimize Geometry" in a long Dna Chain, the program does not respond and stops working !" |
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### Hey @emirfirlar I am @utopian-io. I have just upvoted you! #### Achievements - You have less than 500 followers. Just gave you a gift to help you succeed! - Seems like you contribute quite often. AMAZING! #### Suggestions - Contribute more often to get higher and higher rewards. I wish to see you often! - Work on your followers to increase the votes/rewards. I follow what humans do and my vote is mainly based on that. Good luck! #### Get Noticed! - Did you know project owners can manually vote with their own voting power or by voting power delegated to their projects? Ask the project owner to review your contributions! #### Community-Driven Witness! I am the first and only Steem Community-Driven Witness. <a href="https://discord.gg/zTrEMqB">Participate on Discord</a>. Lets GROW TOGETHER! - <a href="https://v2.steemconnect.com/sign/account-witness-vote?witness=utopian-io&approve=1">Vote for my Witness With SteemConnect</a> - <a href="https://v2.steemconnect.com/sign/account-witness-proxy?proxy=utopian-io&approve=1">Proxy vote to Utopian Witness with SteemConnect</a> - Or vote/proxy on <a href="https://steemit.com/~witnesses">Steemit Witnesses</a> [](https://steemit.com/~witnesses) **Up-vote this comment to grow my power and help Open Source contributions like this one. Want to chat? Join me on Discord https://discord.gg/Pc8HG9x**
| author | utopian-io |
|---|---|
| permlink | re-emirfirlar-bug-avogadro-molecule-editor-if-you-doing-optimize-geometry-in-a-long-dna-chain-the-program-does-not-respond-and-stops-working-20180220t205621376z |
| category | utopian-io |
| json_metadata | {"tags":["utopian-io"],"community":"utopian","app":"utopian/1.0.0"} |
| created | 2018-02-20 20:56:21 |
| last_update | 2018-02-20 20:56:21 |
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